Illumina® Genotyping Panels
The flexibility of the Illumina® platform allows high density genome wide genetic association studies as well as customized focused genotyping to investigate specific areas of the genome or disease related pathways. Flexible content and sample throughput options provide researchers a personalized approach to meet research needs.
Infinium Standard Content Arrays
Human660W Quad BeadChip: PDF
An ideal combination of high-coverage genome-wide SNP and CNV markers in a high-throughput format, this BeadChip builds on the content of the HumanHap 550 BeadChip and includes approximately 100,000 additional markers developed in collaboration with researchers around the world. It offers high-value coverage across many populations and captures the majority of known variations.
HumanOmni 1-Quad BeadChip: PDF
Genome-wide coverage from the 1,000 Genomes Project and confirmed disease associations. High marker density and the fewest large gaps ensure precise CNV detection - more than 6,000 common and 5,000 rare CNV regions with 10–15 markers per region. The HumanOmni1-Quad BeadChip’s high-throughput format and low sample input requirements (200 ng) support rapid, cost-effective studies.
Human 1M Duo BeadChip: PDF
An array that provides an unprecedented level of content with over one million SNPs on a single array. This BeadChip targets genes, tag SNPs, copy number variation and other genomic regions including 160 mitochondrial SNPs. Approximately 400,000 SNPs are within 10 kb of gene regions representing greater than 99% of RefSeq genes.
HumanCytoSNP-12 BeadChip: PDF
A 12-sample BeadChip featuring approximately 300,000 genetic markers that target abnormalities associated with more than 300 syndromes containing 200,000 informative tag SNPs and supports whole-genome association studies. It also offers boosted coverage in pericentromeric regions, subtelomeric regions, and sex chromosomes. Additional high-value targets include 400 genes involved in developmental defects, mental retardation, and other structural changes.
Infinium™ Custom Content Arrays
iSelect Infinium Custom Genotyping:
This 12-sample BeadChip allows you to design a custom panel of up to 60,800 bead types. This is ideal for investigations of specific genomic areas or disease related pathways.
GoldenGate Standard Content Arrays
DNA Test Panel: PDF
This panel contains 360 SNPs and can be used to pre-screen DNA samples for performance before conducting large studies or to assess population stratification in study samples.
Cancer SNP Panel: PDF
This panel is designed to conduct candidate gene-based association studies. The more than 1,400 SNPs derived from over 400 genes thought to be involved in cancer were selected from the National Cancer Institute’s Cancer Genome Anatomy Project SNP 500 Cancer Database.
MHC Panels: PDF
There are three panels for mapping disease-associated variants in the MHC region that can be used independently or can be combined for more extensive coverage.
• MHC Mapping Panel: This panel contains 1,293 SNPs evenly spaced across the region (average spacing of 3.8 kb)
• MHC Exon-Centric Panel: This panel contains 1,228 SNPs within 10 kb of coding sequences (average of 7.7 SNPs per gene in the 160 gene region)
• MHC Panel Set: This panel is an optimized set of 2,360 SNPs consisting of the Mapping Panel and Exon-Centric Panel for comprehensive coverage of the MHC region